张守栋-云南大学农学院

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中心成员

张守栋研究员/东陆骨干教授

姓名：张守栋

导师资格：作物学，农艺与种业，保护生物学（博士）

Email: zhangs@ynu.edu.cn

地址：云南省昆明市呈贡区大学城云南大学农学院，邮编650504

教育背景

1. 2004/10 - 2007/12，维也纳大学，MAX F. PERUTZ LABORATORIES，遗传学博士，导师： Friedrich Kragler 博士，博士论文：南瓜韧皮汁液中系统小RNA的克隆和功能分析

2. 1996/09 - 1999/06，南京农业大学，植物学硕士, 导师：顾德兴教授，硕士论文：繁缕和无瓣繁缕六个居群的数值分析

工作经历

1. 2022/10 -，云南大学，资源植物研究院，教授

2. 2018/06 – 2022/09，香港中文大学，生命科学学院，研究助理教授

3. 2014/06 - 2018/06，香港浸会大学，生物学系，研究助理教授

4. 2010/08 - 2014/06，国王阿卜杜拉科技大学，博士后，合作导师：朱健康教授，熊礼明教授

5. 2009/01 – 2010/07 加州大学河滨分校，博士后, 合作导师：朱健康教授

6. 2008/02 – 2008/12 普渡大学，博士后，合作导师：Stanton B. Gelvin教授

7. 2004/04 – 2004/10 维也纳农业大学，访问学者，导师：Herta Steinkellner教授和Richard Strasser博士。

8. 1999/07 – 2004/04 南京农业大学，助教，讲师

研究方向

作物表观遗传学和生物育种

代表论文和著作

1. Ming Luo, Tomasz Jacek Sarnowski, Marc Libault, Gabino Ríos, Jean-Benoit Charron, Nitin Mantri, Shoudong Zhang (2023) Editorial: New insights into mechanisms of epigenetic modifiers in plant growth and development, volume II. Front Plant Sci. 14:1213511. doi: 10.3389/fpls.2023.1213511

2. Hafiz Mamoon Rehman , Shengjie Chen, Shoudong Zhang , Memoona Khalid , Muhammad Uzair , Phillip A. Wilmarth, Shakeel Ahmad and Hon-Ming Lam (2022) Membrane Proteomic Profiling of Soybean Leaf and Root Tissues Uncovers Salt-Stress-Responsive Membrane Proteins. Int. J. Mol. Sci. 23(21), 13270; https://doi.org/10.3390/ijms232113270

3. Yiping Wang, Hailei Zhang, Pengxi Wang, Huan Zhong, Wuzhen Liu, Shoudong Zhang, Liming Xiong, Yingying Wu, Yiji Xia (2022) ArabidopsisEXTRA-LARGE G PROTEIN 1 (XLG1) functions together with XLG2 and XLG3 in PAMP-triggered MAPK activationand immunity. J. Integr. Plant Biology DOI:10.1111/jipb.13391

4. Qianwen Wang^1,2†, Xiucong Bao^3†, Shengjie Chen^1,2†, Huan Zhong^4†, Yaqin Liu^1,2, Li Zhang^1,2, Yiji Xia^2,4,5, Friedrich Kragler⁶, Ming Luo^7*, David Xiang Li^4*, Hon-Ming Lam^1,2*, Shoudong Zhang^1,2*(2021) AtHDA6 functions as an H3K18ac eraser to maintain pericentromeric CHG methylation in Arabidopsis thaliana. Nucleic Acids Research, 49(17): 9755-9767

5. Shangqian Xie ^{1, #}, Amy Wing-Sze Leung^2,#, Zhenxian Zheng², Dake Zhang³, Chuanle Xiao^4,*, Ruibang Luo^2,*, Ming Luo^5,*, Shoudong Zhang^6,7,* (2021) Applications and potentials of nanopore sequencing in the (epi)genome and (epi)transcriptome era. The innovation, 2(4):100153

6. Zhaogeng Lu , Jiawen Cui , Li Wang , Nianjun Teng , Shoudong Zhang , Hon-Ming Lam , Yingfang Zhu , Siwei Xiao , Wensi Ke , Jinxing Lin , Chenwu Xu , Biao Jin (2021) Genome-wide DNA mutations in Arabidopsis plants after multigenerational exposure to high temperatures. Genome Biology 22(1):160. doi: 10.1186/s13059-021-02381-4.

7. Hailei Zhang, Huan Zhong, Xufeng Wang, Shoudong Zhang, Xiaojian Shao, Hao Hu, Zhiling Yu, Zongwei Cai, Xuemei Chen, and Yiji Xia (2021) Use of NAD tagSeq II to identify growth phase-dependent alterations in E. coli RNA NAD+ capping PNAS, 118 (14) e2026183118

8. Shoudong Zhang, ^†,*, Runsheng Li, ^†, Li Zhang, Shengjie Chen, Min Xie, Liu Yang, Yiji Xia, Christine H. Foyer, Zhongying Zhao, *, Hon-Ming Lam, * (2020) New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs, Nucleic Acids Research, 48(14):7700-7711

9. Ming Luo, Gabino Ríos, Tomasz Jacek Sarnowski, Shoudong Zhang, Nitin Mantri, Jean-Benoit Charron and Marc Libault (2020) Editorial: New Insights Into Mechanisms of Epigenetic Modifiers in Plant Growth and Development. Front. Plant Sci. 10:1661. doi: 10.3389/fpls.2019.01661

10. Hailei Zhang, Huan Zhong, Shoudong Zhang, Xiaojian Shao, Min Ni, Zongwei Cai, Xuemei Chen, and Yiji Xia (2019) NAD tagSeq reveals that NAD+-capped RNAs are mostly produced from a large number of protein-coding genes in Arabidopsis. PNAS, 116 (24) 12072-12077

11. Daogang Guan, Yiji Xia, Shoudong Zhang* (2019) Analyzing and Predicting Phloem Mobility of Macromolecules with an Online Database. In Phloem pp 433-438 edited by Johannes Leische, Springer Nature publisher.

12. Lei Yang , Valentina Perrera , Eleftheria Saplaoura , Federico Apelt , Mathieu Bahin , Amira Kramdi , Justyna Olas , Bernd Mueller-Roeber , Ewelina Sokolowska , Wenna Zhang , Runsheng Li , Nicolas Pitzalis , Manfred Heinlein , Shoudong Zhang, Auguste Genovesio , Vincent Colot , Friedrich Kragler (2019) m5C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants. Current Biology. 29(15): 2465-2476.e5

13. Wei Huang, Chao Zhao, Huan Zhong, Shoudong Zhang, Yiji Xia, Zongwei Cai (2019) Bisphenol S induced epigenetic and transcriptional changes in human breast cancer cell line MCF-7. Environ Pollut 246:697-703.

14. Shoudong Zhang*, Huoming ZHANG, Yiji XIA*, Liming Xiong*. (2018) The caseinolytic protease complex component CLPC1 in Arabidopsis maintains proteome and RNA homeostasis in chloroplasts. BMC Plant Biology. 18:192 (doi.org/10.1186/s12870-018-1396-0)

15. Daogang Guan, Bin Yan, Jianmin Hua, Christopher Thieme, Hailong Zhu, Zhongying Zhao, Friedrich Kragler *, Yiji Xia*, Shoudong Zhang*. (2017) PlaMoM: A comprehensive database compiles plant mobile macromolecules. NUCLEIC ACIDS RESEARCH （NAR） 45(Database issue): D1021–D1028.

16. Shoudong Zhang, Xiangqiang Zhan, Xiaoming Xu, Peng Cui, Jian-Kang Zhu, Yiji Xia and Liming Xiong（2015）Two domain-disrupted hda6 alleles have opposite epigenetic effects on transgenes and some endogenous targets Scientific Reports 5:17832.

17. Peng Cui†, Shoudong Zhang†, Feng Ding, Shajahan Ali and Liming Xiong (2014) Dynamic Regulation of Genome-wide Alternative Splicing and Stress Tolerance by the Sm-like Protein SAD1 in Arabidopsis. Genome Biology, 15:R1 (#, co-first author).

18. Feng Ding, Peng Cui, Zhenyu Wang, Shoudong Zhang, Shajahan Ali and Liming Xiong (2014) Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis. BMC Genomics. 15:431

19. Tao Chen, Peng Cui, Hao Chen, Shajahan Ali, Shoudong Zhang, Liming Xiong (2013) A KH-Domain RNA-Binding Protein Interacts with FIERY2/CTD Phosphatase-Like 1 and Splicing Factors and Is Important for Pre-mRNA Splicing in Arabidopsis. Plos genetics 9(10): e1003875.

20. Zhihuan Gao, Hai-Liang Liu, Lucia Daxinger, Olga Pontes, Xinjian He, Weiqiang Qian, Huixin Lin, Mingtang Xie, Zdravko J. Lorkovic, Shoudong Zhang, Daisuke Miki, Xianqiang Zhan, Dominique Pontier, Thierry Lagrange, Hailing Jin, Antonius J. Matzke, Marjori Matzke, Craig S. Pikaard, and Jian-Kang Zhu, (2010) An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature. May 6; 465(7294): 106–109

21. Na You, Gabriel Murillo, Xiaoquan Su, Xiaowei Zeng, Jian Xu, Kang Ning, Shoudong Zhang, Jiankang Zhu, and Xinping Cui (2012) SNP calling using genotype model selection on high-throughput sequencing data. Bioinformatics. 28(5): 643-650

22. Shoudong Zhang, Li Sun and Friedrich Kragler (2009) The Phloem-Delivered RNA Pool Contains Small Noncoding RNAs and Interferes with Translation. Plant Physiology 150:378-387

23. Nikola Winter, Gregor Kollwig, Shoudong Zhang and Friedrich Kragler (2007) MPB2C, a Microtubule-Associated Protein, Regulates Non-Cell-Autonomy of the Homeodomain Protein KNOTTED. The Plant Cell 19:3001-3018

（更新日期：2022.11.09）